tag: performance

Projects

• z-fasta Zig

  FASTA indexing, region extraction, validation, and stats in a few MB of memory, writing samtools-compatible .fai indexes.

• zebrac Zig

  Linux command benchmarking on perf_event_open, with hardware counters, peak memory, and a terminal view. Extended from andrewrk/poop.

• zmz Zig

  mzML reader and writer for Zig that streams any file size in a few MiB of memory, with indexed lookup and MS-Numpress arrays.

• z-fastq Zig

  Count, check, sample, interleave, and trim paired FASTQ in small, predictable memory, from one static binary.

• kanit Zig

  Workflow engine for one Linux workstation: runs each step within its CPU and memory request, reruns only what changed, and keeps every attempt on record.

• zamf Zig, private

  Reads, checks, filters, sorts, and repairs SAM and BAM files in about 1 MiB of working memory, from one static binary.