tag: proteoforge
2 posts, 1 project, 1 publicationWriting about proteoforge from December 2025 to June 2026.
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ProteoForge is out in Journal of Proteome Research. What changed during review, what is still broken, and where the package is headed.
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The story behind ProteoForge, a framework for finding differential proteoforms in bottom-up proteomics data. Why protein-level averages hide biology, how missing data broke every tool we tried, and what we found when we applied it to a hypoxia dataset.